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Table 4 Chikungunya virus genotypes circulating in Indonesia

From: Chikungunya virus infection in Indonesia: a systematic review and evolutionary analysis

Year Location Setting Number of sequences Genotype (n) Accession number (GenBank) Reference
2015 Jambi Non-outbreak 8 Asian KX097981-KX097988 [86]
2016 Bali Outbreak 6 Asian KY885022-KY885027 [79]
2013 Indonesia Exported case 1 Asian KF872195 [85]
2012 Bali Exported case 1 Asian KM673291 [104]
2011 Various places Outbreak 28 ECSA (2), Asian (26) KJ729829-KJ729856 [13]
2011 Surabaya Ae. aegypti male 2 Asian AB678689-AB678690 [84]
2010–2011 Surabaya Non-outbreak 17 Asian AB678691-AB678695 AB678678-AB678688 [84]
2010 Indonesia Exported case 1 ECSA KC862329 [103]
2009 Indonesia Exported case 1 Asian FR846307 [99]
2007-2014a Indonesia Exported case 29 ECSA (6), Asian (23) KU561427-KU561432 and KU561436-KU561458 [23]
2008 Indonesia Exported case 2 ECSA (1), Asian (1) FJ445483, FJ445472 [20]
2007 Indonesia Exported case 1 Asian EU192143 [83]
2007–2008 Indonesia Exported case 7 Asian FJ807897, FJ807886-FJ807891 [101]
2007b Bandung Non-outbreak 3 Asian KT175539-KT175541 [82]
2000–2008 Bandung Non-outbreak 20 Asian KC879559-KC879578 [95]
1985 Indonesia Unknown 1 Asian HM045797 [77]
1985 Ambon Unknown 1 Asian AF192894 [109]
1983 Indonesia Unknown 1 Asian HM045791 [77]
  1. ECSA East-Central South African gebnotype
  2. a ECSA genotype was isolated during 2009–2010 only
  3. b Sequences are part of non-structural gene