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Table 3 Description of clusters containing greater than 2% of isolates in this study and their worldwide distribution in the SITVIT2 database

From: Spoligotyping based genetic diversity of Mycobacterium tuberculosis in Ethiopia: a systematic review

SIT (Clade) Octal number N. strains (%) in this study N. in the data base Distribution in regions with ≥3% of a given SITsa Distribution in countries with ≥3% of a given SITsb
149 (T3_ETH) 777,000,377,760,771 420 (16.2) 241 EURO-N 33.2, AFRI-E 32.4, EURO-W 12.4, ASIA-W 10.8, AMER-N 8.7 ETH 32.4, DNK 23.6, SAU 10.8, USA 8.7, NLD 7.1, GBR 5.8, FRA 3.7
53 (T1) 777,777,777,760,771 343 (13.2) 3812 AMER-N 21.7, EURO-W 16.1, AMER-S 9.8, EURO-S 9.2, ASIA-W 8.3, AFRI-S 6.3, EURO-N 5.5, AFRI-E 3.9 USA 21.3, ZAF 6.1, ITA 5.9, AUT 5.6, BRA 5.1, TUR 4.3, FRA 3.9, SAU 3.4
25 (CAS_DELHI) 703,777,740,003,171 266 (10.2) 254 ASIA-W 34.3, ASIA-S 11.8, EURO-N 6.3, AFRI-N 9.8, EURO-W 9.1, AMER-N 19.3 SAU 33.8, USA 19.3, IND 6.3, SDN 5.5, NLD 5.5, GBR 3.9, LIB 3.5
37 (T3) 777,737,777,760,771 162 (6.2) 243 EURO-W 18.9, AMER-N 17.3, ASIA-W 13.6, EURO-N 12.8,EURO-E 7, ASIA-S 6.2, EURO-S 4.5, AMER-S 4.1,AFRI-E 3.7, CARI 3.7 USA 15.2, SAU 9.8, DNK 7.0, NLD 5.7, AUT 4.9, CZE 4.9, IND 4.5, BGR 3.9, ITA 3.7, FRA 3.3, TUR 3.3
21 (CAS1_KILI) 703,377,400,001,771 102 (4.0) 243 AFRI-E 61.3, AMER-N 9.1, EURO-W 8.6, EURO-N 7, AFRI-S 5.3, ASIA-W 4.9 TZA 25.5, MDG 15.2, USA 9.0, ZMB 9.0, KEN 7.0, NLD 5.3, ZAF 5.3, SAU 4.9, GBR 4.1
54(MANU2) 777,777,777,763,771 87 (3.4) 114 ASIA-S 21.1, AMER-N 17.5, AFRI-S 14, ASIA-W 12.3, ASIA-N 8.8, AMER-S 3.5, EURO-N 3.5, EURO-W 3.5 IND 19.3, USA 17.5, ZAF 14.0, SAU 9.6, RUS 8.8
26(CAS1_DELHI) 703,777,740,003,771 76 (3.0) 896 ASIA-S 48.4, AMER-N 23.7, EURO-N 8.6, ASIA-W 7.9, EURO-N 3 USA 23.7, IND 23.4, PAK 16.1, BGD 8.0, SAU 7.8, NLD 4.8
52 (T2) 777,777,777,760,731 69 (2.7) 526 EURO-W 26, AMER-N 19.8, EURO-E 7.6, EURO-N 6.5, AFRI-M 6.3, ASIA-W 5.7, EURO-S 5.5, AFRI-S 3.8, AFRI-S 3.8, AFRI-E 3.2 USA 19.0, BLG 8.4, FRA 7.6, NLD 5.1, AUS 4.4, CZE 4.7, ITA 4.7, CAM 4.5, ZAF 3.8
910 (ETH) 700,000,007,177,771 65 (2.5) 5 AMER-N 60, AFRI-E 40 USA 60.0, ETH 40.0
289(CAS1_DELHI) 703,777,740,003,571 59 (2.3) 9 ASIA-S 44.4, EURO-W 22.2, ASIA-W 11.1, AUST 11.1, AMER-N 11.1 NZD 22.2, PAK 22.2, AUS 11.1, BGD 11.1, IND 11.1, SAU 11.1, USA 11.1
  1. aWorldwide distribution of SITs with more than 3% in the SITVIT2 until April 2, 2017, were included. Regions and sub-regions are defined according to United Nations (http://unstats.un.org/unsd/methods/m49/m49regin.htm); regions: AFRI (Africa), AMER(Americas), ASIA(Asia), EURO(Europe), and OCE (Oceania), subdivided in: E (Eastern),M(Middle), C (Central), N (Northern), S (Southern), SE (South-Eastern), and W(Western). Furthermore, CARIB (Caribbean) belongs to Americas, while Oceania is subdivided in 4subregions, AUST (Australasia), MEL (Melanesia), MIC (Micronesia), and POLY (Polynesia).bThe 3-letter country codes are according to http://en.wikipedia.org/wiki/ISO 3166–1 alpha-3; countrywide distribution is only shown for SITs with ≥3% of given SITs as compared to their totalnumberintheSITVIT2 database