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Table 1 Study genotypes

From: Validation of genotype cluster investigations for Mycobacterium tuberculosis: application results for 44 clusters from four heterogeneous United States jurisdictions

PCRType Cluster(s) Jurisdictions* Lineage† Spoligotype MIRU12 Study cases US cases‡ States with genotype‡
PCR00002 05, 21, 32, 35, 38 5 (GA/MA3/MD) L2 000000000003771 223325173533 44 1619 46
PCR00015 44 1 (GA) L4 777776777760601 224325153323 15 749 43
PCR00016 16, 36 2 (GA/MA) L4 700036777760731 222325143223 29 227 30
PCR00017 25, 43 2 (GA/TX) L4 777776777760601 224325153324 7 139 28
PCR00022 22 1 (MA) L4 777777777720771 225325153323 3 435 42
PCR00036 41 1 (TX) L2 000000000003771 223425173563 8 165 22
PCR00041 28 1 (TX) L1 677777477413771 254326223432 13 1392 46
PCR00044 17 1 (MD) L3 703377400001771 227425113434 5 110 26
PCR00051 39 1 (TX) L4 776037777760771 223125163324 29 164 28
PCR00079 03 1 (MD) L4 777777777760771 223125153324 5 149 30
PCR00169 18 1 (MD) L4 777776777760771 224325124324 4 41 17
PCR00224 11 1 (TX) L2 000000000003771 223325163333 33 116 16
PCR00293 30 1 (GA) L4 777777777760771 223225141324 16 30 3
PCR00497 26 1 (TX) L4 776377777760771 233325153324 10 79 23
PCR00578 13 1 (GA) L4 777776777760771 125325143224 13 43 7
PCR00719 10 1 (TX) L4 777777777760771 223425143322 15 124 23
PCR00724 06 1 (MA) L4 777777777760771 225125113322 3 89 24
PCR00849 23 1 (MA) L4 777777347760471 224315143324 8 39 12
PCR01017 34 1 (MD) L4 776177607760771 224326133324 4 42 17
PCR01034 37 1 (MA) L4 777777777760731 223425123324 3 11 5
PCR01046 07 1 (MA) L4 677777607760771 223226153321 4 58 19
PCR01047 01 1 (MD) L4 777776777760601 223325153322 16 29 5
PCR01201 12 1 (TX) L2 000000000003771 223325173534 32 164 25
PCR01571 31 1 (GA) L2 000000000003771 223225173433 8 32 11
PCR01674 02 1 (MD) L4 700076777760771 225225153326 6 12 3
PCR01872 15 1 (GA) L4 777776777760601 223325153324 3 6 4
PCR01873 40 1 (TX) L4 777776777760601 224325153321 3 28 10
PCR02143 04 1 (MD) L4 777777777720771 225325153322 3 34 16
PCR02397 29 1 (GA) L4 777776777760601 223325153323 11 50 10
PCR02651 19 1 (MD) L4 777777743760771 223215153324 3 15 9
PCR03405 24 1 (MA) L4 776377777760771 232325143324 9 11 2
PCR03412 08 1 (MA) L2 000000000003771 222315173543 6 16 5
PCR03588 42 1 (GA) L4 037776777760601 224325153423 6 17 3
PCR03994 20 1 (MD) L4 777777600060771 224226123311 3 12 2
PCR04200 33 1 (MD) L4 776177400000171 223326133323 4 10 3
PCR04837 27 1 (TX) L4 777776777760601 224315163323 4 5 1
PCR04846 09 1 (TX) L2 000000000003771 223425163333 7 17 1
PCR06732 14 1 (GA) L4 777760377760771 223225153325 6 8 1
  1. *Number of study jurisdictions where the genotype was investigated
  2. †L1: Indo-Oceanic; L2: East Asian; L3: East African Indian; L4: Euro-American; ‡Verified cases of tuberculosis reported by CDC, 2006-2010. MIRU: mycobacterial interspersed repetitive units; PCR: polymerase chain reaction