- Research article
- Open Access
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Epidemiology and clinical findings associated with enteroviral acute flaccid paralysis in Pakistan
© Saeed et al; licensee BioMed Central Ltd. 2007
- Received: 28 June 2006
- Accepted: 15 February 2007
- Published: 15 February 2007
Enteroviruses are among the most common viruses infecting humans worldwide and they are associated with diverse clinical syndromes. Acute flaccid paralysis (AFP) is a clinical manifestation of enteroviral neuropathy, transverse myelitis, Guillian-Barre Syndrome, Traumatic neuritis and many other nervous system disorders. The objective of this study was to understand the role of Non-Polio Enteroviruses (NPEV) towards this crippling disorder.
Stool specimens of 1775 children, aged less than 15 years, suffering from acute flaccid paralysis were collected after informed consent within 14 days of onset of symptoms during January 2003 to September 2003. The specimens were inoculated on RD and L20B cells using conventional tube cell culture while micro-neutralization test was used to identify the non-polio enterovirus (NPEV) serotypes. Detailed clinical information and 60-days follow-up reports were analyzed for NPEV-associated AFP cases.
NPEV were isolated from 474 samples. The male to female ratio was 1.4:1. The isolation of NPEV decreased significantly with the increase in age. Cases associated with fever at the onset of NPEV-associated AFP were found to be 62%. The paralysis was found asymmetrical in 67% cases, the progression of paralysis to peak within 4 days was found in 72% cases and residual paralysis after 60 days of paralysis onset was observed in 39% cases associated with NPEV. A clinical diagnosis of Guillian-Barre syndrome was made in 32% cases. On Microneutralization assay, echo-6 (13%) and coxsackievirus B (13%) were the most commonly isolated serotypes of NPEV along with E-7, E-13, E-11, E-4 and E-30. The isolates (n = 181) found untypable by the antiserum pools were confirmed as NPEV by PCR using Pan-Enterovirus primers.
The present study suggests that NPEV are a dominant cause of AFP and different serotypes of NPEV are randomly distributed in Pakistan. The untypable isolates need further characterization and analysis in order to determine their association with clinical presentation of a case.
- Acute Flaccid Paralysis
- Human Enterovirus
- Wild Poliovirus
- Residual Paralysis
Enteroviruses (genus Enterovirus, family Picornaviridae) are among the most common viruses infecting humans worldwide. Enteroviruses are associated with diverse clinical syndromes ranging from minor febrile illness to severe, potentially fatal conditions (e.g., aseptic meningitis, encephalitis, paralysis, myocarditis, and neonatal enteroviral sepsis) and could be linked with the development of some chronic diseases (e.g., type 1 diabetes and dilated cardiomyopathy) [1, 2].
Serotypes of human enteroviruses have traditionally been classified into echoviruses, coxsackieviruses group A and B, and polioviruses. This traditional taxonomy was based on the associated disease in humans and animal model systems, sometimes resulting in overlaps between groups and difficulties with classification. As a result, beginning in the 1960s, newly discovered enteroviruses received a numeric designation (e.g., enterovirus 71) instead of being assigned to one of the traditional groups .
Current taxonomy takes into account molecular and biologic characteristics and divides human enteroviruses into four species (human enterovirus [HEV] A, B, C, and D) but keeps traditional names for individual serotypes . Sixty-eight serotypes are included in the International Committee on Taxonomy of Viruses classification. The distribution of enteroviruses by species only partially corresponds to the groups in the traditional classification. Because molecular techniques of enterovirus typing are becoming increasingly available, new enteroviruses continue to be identified, and enteroviruses 79–101 have been recently described [4–12]. Echoviruses 22 and 23 have been reclassified as a new genus (Parechovirus) in Picornaviridae and are termed human parechoviruses 1 and 2, respectively. Although they belong to genetically and biologically distinct genera, human parechoviruses and human enteroviruses share many epidemiologic and clinical characteristics .
Various studies in India suggest the frequency of NPEV isolation from acute flaccid paralysis (AFP) cases from 20% to 54% [13–15]. Most of the AFP cases in United States of America were found to be caused by NPEV in the post vaccination era . Several cases of paralysis were reported in association with enteroviruses, especially coxsackieviruses in Scotland . Paralysis has also been reported in association with coxsackieviruses B2-B6, enterovirus 71 and echovirus types 3, 4, 6, 9, 11, 19 and 22 [18–20].
Enteroviruses grow well on HeLa cells, Hep-2 cells, human rhabdomyosarcoma cell line RD cells, MRC-5 cells, human embryonic kidney cells and buffalo green monkey kidney cells  but the RD cell line was found to be the most sensitive cell line for the isolation of enteroviruses . Enteroviruses can be isolated from faeces, pharyngeal washings, cerebrospinal fluid (CSF), spinal cord, brain, heart, blood, conjunctivae and lesions of skin or mucous membrane. Retrospective evaluation of the relative utilities of different clinical specimens has proven that stool should be cultured for all patients suspected of NPEV infection .
Serotypes may be identified by reference antisera. The antiserum pools are issued in freeze-dried form to reference centres after formal request to WHO, Geneva . The main objective to conduct this study was to identify the NPEV serotypes prevalent in Pakistan and their association with AFP cases.
a) Patients and specimens
The study was approved by Internal Review Board of National Institute of Health, Islamabad. All AFP cases in children aged <15 years were detected through active surveillance with a network of surveillance officers posted through out the country during January 2003 to September 2003. Two stool samples 24–48 hours apart from a total of 1775 AFP cases were collected within 14 days of onset of paralysis with the prior oral/verbal informed consent. Patient information was recorded on a standard questionnaire including demographic details, date of onset of paralysis and clinical presentation like fever at the onset of paralysis, symmetry of paralysis, location of paralysis and time duration for paralysis progression to peak. Specimens were transported to the Regional Reference Laboratory, National Institute of Health, Islamabad in good condition (cold chain maintained, container not leaking, good specimen quality and adequate quantity). Sixty-day follow-up reports were obtained through the same network.
The samples were treated with chloroform to remove bacteria and fungi and to dissociate virus aggregates. Conventional tube cell culture method was used for virus isolation in accordance with WHO recommendations [25, 26]. Each specimen extract (0.2 ml) was inoculated in two cell culture tubes, one containing RD cells and other L20B cells, after aspirating the growth medium and replacing it with 1 ml maintenance medium. The tubes were incubated in the stationary sloped (5°) position at 36°C and examined daily for evidence of cytopathic effect (CPE). When complete CPE was obtained, the infected cells were harvested and kept frozen (-20°C) until typing.
c) Microneutralization assay
The typing sera kit was provided by the National Institute of Public Health and the Environment, Bilthoven, the Netherlands (RIVM). The kit contained reference-typing sera against 21 of the 64 known human NPEV serotypes combined as nine antiserum pools. 50 μl of antisera was added to the appropriate wells of microtiter plate. Each isolate was tested in duplicate against all the NPEV antiserum pools using 10-3 and 10-4dilutions. 50 μl of both the dilutions were dropped in respective wells and incubated at 37°C for one hour. After incubation, 100 μl of RD cell suspension was distributed into these wells and the plates were incubated at 37°C after covering with non-toxic sealer. Virus controls and cell controls were run along for comparison. The plates were examined daily, till the virus control showed 4+ CPE. The identification was made by analyzing the pattern of inhibition of CPE by the antiserum pools.
d) Polymerase chain reaction
In vitro amplification of the virus isolates was performed by PCR using pan-Enterovirus (Pan-EV) primers which were found untypable by neutralization test. The primer sequence was as follow
The primers used for PCR amplification were selected from the highly conserved 5'non-coding region of the enterovirus and product was amplified by one step RT/PCR . Non-infectious control RNA of pan-enteroviruses was used as positive control, culture supernatant from uninfected cells was used as negative control while buffer instead of samples was used as reagent control. Virus samples were diluted 1:4 in RNase free water. 1 μl diluted sample was added to 19 μl reaction mixture containing 250 μM of each dNTP, 2.5 ul of 10× PCR buffer and 40 pmol of each forward and reverse primers. The reaction mixture was first incubated at 95°C for 5 minutes and then chilled on ice for 5 minutes. Once tube contacts cooled, 5 μl mixture containing 2.0 mM MgCl2, 0.5 mM DTT, 0.2 units Placental RNase inhibitor, 0.07 units AMV reverse transcriptase and 1.5 units Taq polymerase was added. The tubes were placed in thermocycler (BIORAD I-cycler) and cycled as follows: 42°C for 20 min, 95°C for 3 min, 30 cycles at 95°C for 45 sec, 55°C for 45 sec 60°C for 45 sec, respectively. 114 bp sized band of the PCR amplified product was visualized under UV illumination on 10% Poly-acrylamide gel after ethidium bromide staining.
e) Data analysis
Statistical analyses were performed using Epi Info version 6.0d .
Identification of different serotypes identified by Microneutralization test
No. of Isolates
Percentage of Total
Clinical diagnosis of cases reported with paralysis
No. of Cases
Percentage of total
The work presented here is the first report on prevalent serotypes of NPEV in Pakistan along with their epidemiology and clinical characteristics. The work also reflects that isolation of NPEV from AFP cases is common in Pakistan. The findings are in accordance with the studies conducted in India, where NPEV were isolated from 34% of AFP cases. The frequency of NPEV was higher because only the children less than 4 year of age were recruited. Another study in India had isolated NPEV from 20% of acute poliomyelitis cases [13, 14].
Enteroviral infections are more prevalent in children than in adults [29–31]. The age distribution of enterovirus-associated illness in a 10-year surveillance report from the United States recorded that most of the cases were reported in young children . The present study shows that the age of children with NPEV-associated AFP ranged from 1 to 14 years and that the isolation of NPEV decreased significantly with the increase in age. Similar pattern was observed by Morens who analyzed the reports to the CDC on isolation of NPEV for the years 1971–1975 and found that the incidence of reported isolations decreased with increasing age .
Serotyping of the NPEV isolated from the patients of AFP in India showed that Echovirus 6, 11, 9 and coxsackievirus B were the most frequent serotypes of NPEV . In the present study, 38% isolates could not be identified by the antiserum pools provided by WHO. The pools contained antibodies against only 21 of the 68 known human enterovirus serotypes, so their failure to neutralize a given isolate could have been due to the absence of homologous antibodies in the pools used, virus aggregation or presence of a virus mixture . Many enterovirus isolates could not be typed by the microneutralization test during a study of epidemiology of different enterovirus serotypes in Netherlands .
With worldwide Poliovirus surveillance and the recent development of new molecular tools for enterovirus detection and identification, more interest is being given to NPEV especially in polio free countries. As the endemic countries harbouring circulation of wild polioviruses also happen to be developing countries therefore the utility of resources remains low on research oriented activities. A major chunk of resources is still being utilized for eradication activity in countries like Pakistan. Standard methods for enterovirus detection and identification are based on virus isolation on cell culture followed by serotyping the isolated viruses by microneutralization assays using pools of serotype specific antisera . This procedure is time consuming and labour intensive and the availability of specific antisera gradually becomes restricted. Several techniques for rapid detection of the enterovirus genome in clinical samples, most of them based on PCR amplification in the 5' non-coding (5' NC) of the genome have been developed. In this study similar method was used to identify the isolates (n = 181) that could not be serotyped by enterovirus-specific pools available in the laboratory. However such methods do not allow serotype identification and genetic characterization of the detected viruses beyond the genus level . Thus when information on the serotype is needed, virus isolation on cell culture remains the most appropriate technique. To overcome the problems related to the specific antisera, attempts have been made to develop new methods for typing enteroviruses by PCR amplification and partial sequencing in the VP1 region of the genome [9–11].
Fever at the time of onset of paralysis is one of the cardinal signs of poliomyelitis but cases of AFP with NPEV isolates were also reported to have fever at the time of onset. Fever was a major symptom in 53% AFP cases associated with NPEV in India . The presence of fever in almost two third cases in the present study may be due to the fact that most of the time case was reported from hospital where the paralysis had reached its peak. The clinical significance of fever at the onset of paralysis along with rapid progression of asymmetrical paralysis helps in the determination of neuropathies caused by NPEV. 12% patients died within 60 days of the onset of paralysis owing to the severity of disease. No association could be found out between death of patient with age at infection or NPEV responsible.
'The progression of paralysis to peak within 4 days of onset' was recorded in 52% of NPEV-associated AFP cases in Americas with residual paralysis in 24% cases . In the present study, 'the progression of paralysis within 4 days of onset' demonstrated higher percentage reflecting the high severity of disease but its association with low immunity status or lack of proper treatment could not be determined unless further studies are conducted.
The present study suggests that after the eradication of poliomyelitis, AFP cases negative for wild poliovirus but positive for NPEV will continue to be detected. The data also confirms that NPEV circulation is common and isolates may be obtained from persons with AFP whose clinical findings do not resemble poliomyelitis. The results of this study indicate that characterization of NPEV isolates could provide better understanding of the epidemiology of NPEV causing paralysis. Data generated from this study will help future studies on NPEV serotypes circulating in Pakistan and to formulate more effective strategies in view of post eradication era. A better knowledge of the transmission and the implications of NPEV in diseases may also justify the future studies on their molecular epidemiology.
No funding was received for this study. We are deeply grateful to Dr Heath Kelly and Dr DaSilva for their valuable critique on the manuscript.
- Pallansch MA, Roos RP: Enteroviruses: polioviruses, coxsackieviruses, echoviruses, and newer enteroviruses. Fields Virology. Edited by: Knippe DM, Howley PM. 2001, Philadelphia, PA: Lippincott Williams and Wilkins, 723-75. 4Google Scholar
- Khetsuriani N, Parashar UD: Enteric viral infections. Edited by: Dale DC, Federman DD. 2003, Scientific American medicine. New York, NY: WebMD, Inc, 1758-66.Google Scholar
- Stanway G, Brown F, Christian P, et al: Picornaviridae. Virus taxonomy-classification and nomenclature of viruses. 8th report of the International Committee on the Taxonomy of Viruses. Edited by: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA. 2005, Amsterdam, The Netherlands: Elsevier Academic Press, 757-78.Google Scholar
- Oberste SM, Maher K, Michele SM, Belliot G, Uddin M, Pallansch MA: Enteroviruses 76, 89, 90 and 91 represent a novel group within the species Human enterovirus A. J General Virol. 2005, 86: 445-51. 10.1099/vir.0.80475-0.View ArticleGoogle Scholar
- Oberste MS, Maher K, Kilpatrick DR, Flemister MR, Brown BA, Pallansch MA: Typing of human enteroviruses by partial sequencing of VP1. J Clin Microbiol. 1999, 37: 1288-93.PubMedPubMed CentralGoogle Scholar
- Oberste MS, Michele SM, Maher K, Schnurr D, Cisterna D, Junttila N, Uddin M, Chomel JJ, Lau CS, Ridha W, al-Busaidy S, Norder H, Magnius LO, Pallansch MA: Molecular identification and characterization of two proposed new enterovirus serotypes, EV74 and EV75. J Gen Virol. 2004, 85: 3205-12. 10.1099/vir.0.80148-0.View ArticlePubMedGoogle Scholar
- Oberste MS, Maher K, Flemister MR, Marchetti G, Kilpatrick DR, Pallansch MA: Comparison of classic and molecular approaches for the identification of untypeable enteroviruses. J Clin Microbiol. 2000, 38: 1170-4.PubMedPubMed CentralGoogle Scholar
- Oberste MS, Maher K, Williams AJ, Dybdahl-Sissoko N, Brown BA, Gookin MS, Penaranda S, Mishrik N, Uddin M, Pallansch MA: Species-specific RT-PCR amplification of human enteroviruses: a tool for rapid species identification of uncharacterized enteroviruses. J Gen Virol. 2006, 87: 119-28. 10.1099/vir.0.81179-0.View ArticlePubMedGoogle Scholar
- Oberste MS, Nix WA, Maher K, Pallansch MA: Improved molecular identification of enteroviruses by RT-PCR and amplicon sequencing. J Clin Virol. 2003, 26: 375-7. 10.1016/S1386-6532(03)00004-0.View ArticlePubMedGoogle Scholar
- Norder H, Bjerregaard L, Magnius L, Lina B, Aymard M, Chomel JJ: Sequencing of 'untypable' enteroviruses reveals two new types, EV-77 and EV-78, within human enterovirus type B and substitutions in the BC loop of the VP1 protein for known types. Gen Virol. 2003, 84: 827-36. 10.1099/vir.0.18647-0.View ArticleGoogle Scholar
- Caro V, Guillot S, Delpeyroux F, Crainic R: Molecular strategy for 'serotyping' of human enteroviruses. J Gen Virol. 2001, 82: 79-91.View ArticlePubMedGoogle Scholar
- Norder H, Bjerregaard L, Magnius LO: Homotypic echoviruses share aminoterminal VP1 sequence homology applicable for typing. J Med Virol. 2001, 63: 35-44. 10.1002/1096-9071(200101)63:1<35::AID-JMV1005>3.0.CO;2-Q.View ArticlePubMedGoogle Scholar
- Deivanayagam N, Nedunchelian K, Vasudevan S, Ramamoorthy N, Rathnam SR, Mala N, Ashok TP, Ahmed SS: Etiological agents of acute poliomyelitis in south India. Indian J Pediatr. 1994, 61: 257-262.View ArticlePubMedGoogle Scholar
- Kapoor A, Ayyagari A, Dhole TN: Non-polio enteroviruses in acute flaccid paralysis. Indian J Pediatr. 2001, 68: 927-929.View ArticlePubMedGoogle Scholar
- Sokhey J, Sharma B, Singh H, Sood D: Isolation of poliovirus from cases of acute flaccid paralysis. Indian Pediatr. 1996, 33: 917-920.PubMedGoogle Scholar
- Dietz V, Andrus J, Olive JM, Cochi S, de Quadros C: Epidemiology and clinical characteristics of acute flaccid paralysis associated with non-polio enterovirus isolation: the experience in the Americas. Bull World Health Organ. 1995, 73 (5): 597-603.PubMedPubMed CentralGoogle Scholar
- Grist NR, Bell EJ: Paralytic poliomyelitis and nonpolio enteroviruses: studies in Scotland. Rev Infect Dis. 1984, 6: 385-386.View ArticleGoogle Scholar
- Figueroa JP, Ashley D, King D, Hull B: An outbreak of acute flaccid paralysis in Jamaica associated with echovirus type 22. J Med Virol. 1989, 29: 315-319.View ArticlePubMedGoogle Scholar
- Hayward JC, Gillespie SM, Kaplan KM, Packer R, Pallansch M, Plotkin S, Schonberger LB: Outbreak of poliomyelitis-like paralysis associated with enterovirus 71. Pediatr Infect Dis J. 1989, 8: 611-616.View ArticlePubMedGoogle Scholar
- Koroleva GA, Gracheva LA, Voroshilova MK: Isolation of type 71 enterovirus from patients with a poliomyelitis-like disease during an outbreak in Bulgaria. Vopr Virusol. 1978, 611-618.Google Scholar
- Johnston SLG, Siegel CS: Presumptive identification of enteroviruses with RD, Hep-2 and RMK cell lines. J Clin Microbiol. 1990, 28: 1049-1050.PubMedPubMed CentralGoogle Scholar
- Druyts-Voets E, Yane F, Bosmans E, Colaert J, Desmyter J: Method for selecting optimal cells for enterovirus isolation as determined in an outbreaks of echovirus type 33 meningitis. Eur J Clin Microbiol. 1985, 4: 331-334. 10.1007/BF02013662.View ArticlePubMedGoogle Scholar
- Mintz L, Drew WL: Relation of culture site to the recovery of non-polio enteroviruses. Am J Clin Pathol. 1980, 74: 324-326.View ArticlePubMedGoogle Scholar
- Bahri O, Rezig D, Oueslati BN, Yahiya AB, Sassi JB, Hogga N, Sadraoui A, Triki H: Enteroviruses in Tunisia: Virological surveillance over 12 years (1992–2003). J Med Microbiol. 2005, 54: 63-69. 10.1099/jmm.0.45695-0.View ArticlePubMedGoogle Scholar
- Melnick JL, Wenner HA, Phillips CA: Enteroviruses. Diagnostic procedures of viral, rickettsial and chlamydial infections. Edited by: Lennette E, Schmidt N. 1979, Washington, DC: American Public Health Association, 471-534. 5Google Scholar
- Wood DJ, Hull B: L20B cells simplify culture of polioviruses from clinical samples. J Med Virol. 1999, 58: 188-192. 10.1002/(SICI)1096-9071(199906)58:2<188::AID-JMV15>3.0.CO;2-H.View ArticlePubMedGoogle Scholar
- Yang CF, L. De, Holloway BP, Pallansch MA, Kew OM: Detection and identification of vaccine related polioviruses by the polymerase chain reaction. Virus Res. 1991, 20: 159-179. 10.1016/0168-1702(91)90079-B.View ArticlePubMedGoogle Scholar
- Dean AG, Arner TG, Sunki GG, Friedman R, Lantinga M, Sangam S, Zubieta JC, Sullivan KM, Brendel KA, Gao Z, Fontaine N, Shu M, Fuller G: Epi Info, a database and statistics program for public health professionals. Centers for Disease Control and Prevention, Atlanta, Georgia, USA. 2005Google Scholar
- Cherry JD: Enteroviruses. Infections in the fetus and newborn infant. Edited by: Remington JS, Klein JO. 1995, Philadelphia: WB Saunders. P, 406-446.Google Scholar
- Carron N, Geoffrey BC: A study of enterovirus isolation in Glasgow from 1977 to 1997. J Med Virol. 1999, 58: 304-312. 10.1002/(SICI)1096-9071(199907)58:3<304::AID-JMV18>3.0.CO;2-U.View ArticleGoogle Scholar
- Morens DM: Enteroviral disease in early infancy. J Pediatr. 1978, 92: 374-377. 10.1016/S0022-3476(78)80422-3.View ArticlePubMedGoogle Scholar
- Moore M: From the Centers for Disease Control. Enteroviral disease in the United States, 1970–1979. J Infect Dis. 1982, 146: 103-108.View ArticlePubMedGoogle Scholar
- Verboon MA, Krediet TG, Van Loon AM, Kaan J, Galama JMD, Gerards LG, Fleer A: Epidemiological survey of neonatal non-polio enterovirus infection in the Netherlands. J Med Virol. 2002, 66: 241-245. 10.1002/jmv.2136.View ArticleGoogle Scholar
- Muir P, Kammerer U, Korn K, Mulders M, Poyry T, Weissbrich B, Kandolf R, Cleator G: Molecular typing of enteroviruses; current status and future requirements. Clin Microbiol Rev. 1998, 11: 220-227.Google Scholar
- Van Loon AM, Cleator GC, Ras A: External quality assessment of enterovirus detection and typing. Bull WHO. 1999, 77: 217-223.PubMedPubMed CentralGoogle Scholar
- The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2334/7/6/prepub
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