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CKR-L3, a deletion version CCR6-isoform shows coreceptor-activity for limited human and simian immunodeficiency viruses


Chemokine receptors (CKRs), CCR5 and CXCR4 function as major coreceptors in human/simian immunodeficiency virus (HIV/SIV) infections. About 20 alternative G protein-coupled receptors (GPCRs) have been identified as minor coreceptors for the viruses. We reported CCR6 as an alternative coreceptor. A five-amino acid shorter isoform of CCR6, namely CKR-L3, was examined for its coreceptor function and described in this report.


NP-2 cells transduced with CD4-receptor (NP-2/CD4) normally remain resistant to all HIV/SIV infection; however, further introduction of functional coreceptor can make the cells susceptible to the viruses. NP-2/CD4/CKR-L3 cells were produced to examine coreceptor activity of CKR-L3. Viral antigen in infected NP-2/CD4/coreceptor cells was detected by indirect immunofluorescence assay (IFA). The results were validated by detection of syncytia, proviral DNA and by measuring reverse transcriptase (RT) activities.


HIV-2MIR and SIVsmE660 were found to infect NP-2/CD4/CKR-L3 cells. This justifies the coreceptor function of CKR-L3. Viral antigens appeared faster in NP-2/CD4/CKR-L3 cells than in NP-2/CD4/CCR6, indicates that the CKR-L3 carries more efficient coreceptor-activity. Moreover, syncytia formation was sooner, RT release was higher and earlier through CKR-L3 compared to CCR6. Partial sequence analyses of HIV-2MIR and SIVsmE660 replicated through CKR-L3 and CCR6 coreceptor showed some divergence in envelope region compared to the parental CCR5-variant.


Isoform CKR-L3 exhibited coreceptor activity for limited primary HIV/SIV isolates with better efficiency than CCR6-isoform. Amino acid substitutions in the envelope region of the viruses may confer selective pressure towards CKR-L3-use. CKR-L3 with other minor coreceptors may contribute to HIV/SIV pathogenesis including dissemination, trafficking and latency.


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Correspondence to Salequl Islam.

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  • Chemokine Receptor
  • Viral Antigen
  • Simian Immunodeficiency Virus
  • Immunofluorescence Assay
  • Syncytium Formation