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Table 2 Diversity of VNTR loci and their profiles in all M. tuberculosis strains and Beijing family strains from Beijing city, Jiangsu and Shanghai (references).

From: Genetic diversity of Mycobacterium tuberculosis isolates from Beijing, China assessed by Spoligotyping, LSPs and VNTR profiles

Locus Hunter-Gaston Index (total strains) N=260 No. of alleles (range) Hunter-Gaston Index Beijing Family N=211 No. of alleles (Beijing family) (range) Locus diversity of Beijing family strains in area of isolation
      Beijing (Previous) [24] N=72 [alleles] Jiangsu [23] N=209 Shanghai [22] (Chongming) N=65
VNTR3820 0.851 19 (2–22) 0.789 15 (6–22)    0.85
Qub11b 0.747 10 (1–10) 0.646 9 (1–10) 0.651 [5(3–7)] 0.625 0.65
Qub18 0.696 10 (1–11) 0.613 10 (1–11)    0.65
Qub11a 0.675 9 (2–11) 0.598 8 (3–11)    0.61
Qub26 0.654 12 (1–14) 0.57 11 (1–11) 0.518 [8(3–10)] 0.613 0.60
Mtub21 0.58 7 (1–7) 0.393 6 (1–7) 0.556 [5(1–6)] 0.535 0.52
MIRU26 0.568 9 (1–9) 0.373 7 (3–9) 0.353 [6(3–9)] 0.560 0.61
Qub4156c 0.343 5 (1–5) 0.297 4 (2–5) 0.395 [5(1–5)] 0.203 0.49
MIRU16 0.381 4 (1–4) 0.265 3 (2–4) 0.068 [3(2–4)] 0.262 0.24
Mtub04 0.435 6 (1–6) 0.265 5 (2–6) 0.306 [4(2–5)] 0.426 0.30
ETRE 0.415 5 (2–6) 0.229 5 (2–6) 0.169 [3(4–6)] 0.668 0.25
ETRA 0.418 3 (2–4) 0.224 2 (3–4) 0.232 [3(2–4)] 0.201 0.03
MIRU10 0.434 5 (1–5) 0.21 4 (1–4) 0.144 [3(1–3)] 0.262 0.20
Mtub39 0.332 6 (2–7) 0.204 6 (2–7) 0.171 [5(1–6)] 0.213 0.06
MIRU23 0.194 5 (2–6) 0.179 5 (2–6) 0.014 [2(5–6)] 0.250 0.06
MIRU40 0.356 5 (1–5) 0.171 5 (1–5) 0.194 [4(1–4)] 0.276 0.15
ETRD 0.259 5 (1–5) 0.152 4 (1–4) 0.120 [4(0–3)] 0.536 0.06
MIRU39 0.374 4 (1–4) 0.127 4 (1–4) 0.119 [3(2–4)] 0.178 0.29
Mtub30 0.304 3 (2–4) 0.065 3 (2–4) 0.068 [4(2–5)] 0.196 0.09
MIRU27 0.15 4 (1–4) 0.056 4 (1–4)   0.084 0.03
ETRB 0.182 3 (1–3) 0.038 2 (1–2) 0.014 [2(1–2)] 0.056 0
ETRC 0.03 3 (2–4) 0.028 3 (2–4) 0.094 [4(2–6)] 0.066