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Predominant porB1A and porB1B genotypes and correlation of gene mutations with drug resistance in Neisseria gonorrhoeae isolates in Eastern China
BMC Infectious Diseasesvolume 10, Article number: 323 (2010)
Variations of porB1A and porB1B genes and their serotypes exist in Neisseria gonorrhoeae isolates from different geographical areas, and some site mutations in the porB1B gene correlate with drug resistance.
The β-lactamase production of N. gonorrhoeae isolates was determined by paper acidometric test and nitrocefin discs. The porB1A and porB1B genes of 315 non-penicillinase-producting N. gonorrhoeae (non-PPNG) strains were amplified by PCR for sequencing to determine serotypes and site mutations. A duplex PCR was designed to simultaneously detect both porB1A and porB1B genes. Penicillin and tetracycline resistance was assessed by an in vitro drug sensitivity test.
Of the N. gonorrhoeae isolates, 31.1% tested positive for porB1A and 68.9% for porB1B genes. All the 98 porB1A + isolates belonging to IA6 serotype with either no mutation at the 120 and 121 sites (88.8%) or a D120G (11.2%) mutation and were no resistance to both penicillin and tetracycline. Among the 217 porB1B + isolates, 26.7%, 22.6% and 11.5% belonged to IB3, IB3/6 and IB4 serotypes, respectively. Particularly, two novel chimeric serotypes, IB3/6-IB2 and IB2-IB4-IB2, were found in 77 and 8 porB1B + isolates. Two hundred and twelve (97.7%) of the porB1B + isolates were presented G120 and/or A121 mutations with 163 (76.9%) at both sites. Interestingly, within the 77 porB1B + isolates belonging to IB3/6-IB2 serotype, 15 were discovered to possess novel deletions at both A121 and N122 sites. All the replacement mutations at these sites in PorB1B were correlated with resistance and the deletion mutation showed the highest resistance.
N. gonorrhoeae isolates circulating in Eastern China include a sole PorB1A serotype (IA6) and five PorB1B serotypes. Multiple mutations in porB1B genes, including novel A121 and N122 deletions, are correlated with high levels of penicillin and tetracycline resistance.
Gonorrhoea caused by infection with Neisseria gonorrhoeae is a global sexually transmitted disease. In Chinese populations, gonorrhoea is the most common sexually transmitted disease which causes a serious public health problem [1–5].
The outer membrane of N. gonorrhoeae bears many proteins such as porins that have been studied in considerable detail [6–10]. Gonococcal porins are a group of outer membrane proteins that occur in large amounts on the surface [11–17]. PorB1A and PorB1B porins, which have 65-80% amino acid identity, share 60% of the total gonococcal porin proteins [12, 18]. PorB1A and PorB1B are encoded by the same allele and any particular N. gonorrhoeae strain expresses either PorB1A or PorB1B [12, 19, 20]. PorB1A is present in 10-30% of N. gonorrhoeae isolates, while PorB1B occurs in 70-90% [21, 22]. PorB1A and PorB1B are the serotyping basis of N. gonorrhoeae and mutations are more common in porB1B gene than in porB1A gene [19, 22, 23]. Many investigations revealed geographical diversity of the predominant porB1A and porB1B genotypes isolates in different areas [22, 24–27]. Therefore, determination of porB1A and porB1B genotype distribution in N. gonorrhoeae isolates in different areas is very important for providing a high index of discrimination of different gonococcal strains, identifying the circulating strains and predominant serotypes, and tracking strain transmission in sexual contacts [28–32].
N. gonorrhoeae easily develops resistance to many antibiotics. Previous studies demonstrated that the replacement mutations at the 120 and 121 sites in PorB1B protein enable these strains to increase their resistance to penicillin and tetracycline [33, 34]. However, replacement mutations at the 120 and 121 sites in PorB1A make little contribution to resistance against the two antibiotics [9, 19]. Thus, identification of the two resistance-related site mutations in PorB1B sequences of N. gonorrhoeae isolates, and determination of the correlation between the site mutations and drug resistance are important for chemotherapy of gonorrhoea in the clinical setting. In the present study, we established a duplex polymerase chain reaction (PCR) system to rapidly confirm the porB1A and porB1B genes in N. gonorrhoeae isolates from Chinese patients. And the predominant serotypes based on porB1A and porB1B genotyping of the isolates circulating in Eastern China were determined by sequence analysis. Particularly, mutation at the 120 and 121 sites in PorB1B sequence from the non-penicillinase-producting N. gonorrhoeae (non-PPNG) isolates, as well as the correlation between the mutation patterns and the resistance to penicillin and tetracycline, were investigated.
This research was conducted in accordance with the Declaration of Helsinki, and informed consent was obtained from all patients in this study for collection of clinical specimens to isolate N. gonorrhoeae strains, according to a protocol approved by the Ethics Committee of Zhejiang University.
Bacterial strains and growth
The clinical N. gonorrhoeae strains were isolated from gonorrhea patients from 2005 to 2008 by the clinical laboratories of several hospitals in Zhejiang and Jiangsu provinces, China. All the gonococcal isolates were first identified by the hospital laboratories and subsequently rechecked by our laboratory using microscopy after Gram staining plus oxidase, catalase, and carbohydrate degradation tests . The gonococci were cultured on GCB blood agar plates (bioMérieux, Co., Ltd, Shanghai, China) at 37°C in the presence of 5% CO2 for 24 h. Staphylococcus aureus ATCC25923, Staphylococcus epidermidis ATCC12228, Streptococcus pyogenes ATCC29212, Escherichia coli ATCC25922, Pseudomonas aeruginosa ATCC27543, Klebsiella pneumoniae ATCC700603, Serratia marcescens ATCC14041, Enterobacter cloacae ATCC13047 and Proteus mirabilis ATCC25933 were used to determine the specificity of duplex PCR, and were provided by the Chinese National Institute for Control of Pharmaceutical and Biological Products, and cultured in MH broth (bioMrieux) at 37°C for 24 h.
Paper acidometric test was applied by the clinical laboratories of hospitals to primarily detect the β-lactamase production of gonococcal isolates , and subsequently BBL(tm) Cefinase(tm) Paper Disc (BD, USA) based on nitrocefin coloration was used by our laboratory to further determine the production of gonococcal β-lactamase . Among all the N. gonorrhoeae isolates, 315 strains were identified as non-PPNG that were used in this study.
The gonococci and the other bacteria were collected by centrifugation and washed twice with phosphate buffered saline (PBS). Genomic DNA of each precipitated strain was extracted with a bacterial genomic DNA extraction kit (BioColor Inc., Shanghai, China) and then dissolved in TE buffer for detecting the DNA concentration with ultraviolet (UV) spectrophotometry .
Amplification of entire porB1A and porB1Bgenes
One pair of forward (porB1A/1B-F) and reverse (porB1A/1B-R) primers was used to amplify both the entire porB1A and porB1B genes in genomic DNA of the gonococcal isolates because they have the same nucleotide sequences at the 5' and 3' terminals (Table 1) [19, 38, 39]. A High Fidelity PCR Kit (TaKaRa Co., Ltd, Dalian, China), in which a Taq-Pfu mixture was used as the DNA polymerase, was used to amplify the two target genes. PCR was initiated by incubation at 94°C for 5 min, followed by 30 cycles at 94°C for 30 s, 54°C for 30 s and 72°C for 90 s to amplify each the two genes, and then incubation at 72°C for 10 min. The products in 1.5% ethidium bromide pre-stained agarose gel after electrophoresis were observed under UV light. The target products are predicted to be 981 bp (entire porB1A gene) and 1044 bp (entire porB1B gene).
Sequencing and genotyping
The PCR products of the entire porB1A and porB1B genes from the N. gonorrhoeae isolates were purified with a PCR products purification kit (BioColor) and then ligated into plasmid pMD-18-T to form recombinant pMD-18-TporB1A and pMD-18-TporB1B with a T-A cloning kit (TaKaRa). The inserted target segments in recombinant plasmids were sequenced using the double-stranded dideoxy chain termination method by Invitrogen Co., Ltd, Shanghai, China. The obtained sequencing data were analyzed as well as compared to the sequences of PorB1A and PorB1B serotypes published in GenBank using Clustalx software.
The sequencing data of porB1A and porB1B genes from the N. gonorrhoeae isolates showed that these genes have over 80% identity at the 5' terminal sequences (1-240 bp segments in both genes) and approximately 90% identity at the 3' terminal sequences (714-981 bp segment in porB1A gene and 777-1044 bp segment in porB1B gene). However, a 63 bp segment in the middle region of porB1B gene that was absent in porB1A gene enabled us to design a specific forward primer only for detecting the porB1B gene. Thus, by using two different forward primers (20 pmol porB1A/1B-D-F1 and 20 pmol porB1A/1B-D-F2) and one common reverse primer (20 pmol porB1A/1B-D-R) (Table 1), a duplex PCR system was established to simultaneously detect the porB1A and porB1B genes in the gonococcal isolates. The total volume per duplex PCR was a 50 μl mixture in which 100 ng DNA template was used. The PCR was initiated by incubation at 94°C for 3 min, followed by 35 cycles at 94°C for 30 s, 54°C for 30 s and 72°C for 60 s, and then incubation at 72°C for 7 min. In agarose gel, the porB1A gene product presented a 520 bp fragment and the porB1B gene product showed two fragments of 201 bp and 583 bp.
Drug sensitivity test
Susceptibility of the N. gonorrhoeae isolates to penicillin (bioMérieux) and tetracycline (bioMérieux) was assessed on GC agar plates (bioMérieux) by the standard proportion method [33, 34]. Briefly, each freshly cultured isolate was suspended in GC broth to a density of 104/μl, and 5 μl of gonococcal suspension was spotted onto GC agar plates containing increasing concentrations of penicillin or tetracycline (0.03, 0.06, 0.12, 0.25, 0.5, 1, 2, 4, 8, 16, 32, 64 and 128 μg/ml). After inoculation, the plates were incubated at 37°C in 5% CO2 for 24 h. The minimal inhibitory concentration (MIC) was defined as the minimum concentration of antibiotic at which no more than 5 colonies were observed after incubation. A MIC value ≥2 mg/L was considered as resistance to the antibiotics [40, 41]. This test was repeated as three independent experiments.
Sensitivity and specificity of duplex PCR
In our duplex PCR, porB1A and porB1B gene segments were effectually amplified when using a DNA concentration of N. gonorrhoeae as low as 10 ng, and negative results were shown when using 10 to 500 ng DNA templates of S.aureus ATCC25923, S. epidermidis ATCC12228, S. pyogenes ATCC29212, E. coli ATCC25922, P. aeruginosa ATCC27543, K. pneumoniae ATCC700603, S. marcescens ATCC14041, E. cloacae ATCC13047 and P. mirabilis ATCC25933.
Distribution of porB1A and porB1B genes in N. gonorrhoeaeisolates
Of the 315 N. gonorrhoeae isolates tested, 31.1% (98/315) and 68.9% (217/315) were found by separate PCR to possess porB1A and porB1B genes, respectively. The duplex PCR established in this study accurately distinguished the porB1A and porB1B genes (Figure 1), and presented the same positive rates for porB1A (31.1%) and porB1B (68.9%) genes in the same gonococcal isolates.
porB1A serotype in N. gonorrhoeaeisolates
Compared to the porB1A sequences belonging to different PorB1A serotypes in GenBank, all the 98 porB1A + isolates had 99.47% to 100% nucleotide sequence identity and 99.04% to 100% amino acid sequence identity to the IA-6 serotype (GenBank accession No.: L19962, IA-6 serotype) (Figure 2) .
porB1B serotypes in N. gonorrhoeaeisolates
Compared to the reported porB1B sequences belonging to different serotypes in GenBank [31, 32], 26.7% (58/217), 22.6% (49/217) and 11.5% (25/217) of the 217 porB1B + gonococcal isolates belonged to serotypes IB3, IB3/6, and IB4, respectively. Some (35.5%; 77/217) of the porB1B + isolates were chimeras of the IB3/6 and IB2 serotypes (IB3/6-IB2 serotype) in which about half the sequences from the 5' terminal were like the IB3/6 serotype and the rest were like the IB2 serotype. Also, 3.7% (8/217) of the porB1B + isolates were chimeras of the IB2 and IB4 serotypes (IB2-IB4-IB2 serotype) in which the sequence in the middle was like the IB4 serotype but those at the two terminals were like the IB2 serotype (Figure 3).
Mutations at the 120 and 121 sites in PorB1A and PorB1B
Mutations at the 120 and 121 sites in PorB1A and PorB1B sequences from all 315 N. gonorrhoeae isolates are listed in Table 2. In the 98 porB1A + isolates, 88.8% (87/98) had D120 and G121 in the PorB1A sequences which is identical to those in the reported PorB1A sequence belonging to the IA-6 serotype (GenBank accession No.: L19962) , and the remaining 11 porB1A + isolates had a D120G mutation alone (Figure 2). In the 217 porB1B + gonococcal isolates, only 2.3% (5/217, three belonging to the IB3/6 serotype and two belonging to the IB3 serotype) had no mutation at the 120 and 121 sites (G120 and A121), while 97.7% (212/217) showed various mutations at the sites. Particularly, in the 212 porB1B + isolates with the site mutations, 15 isolates (6.9%, 15/217) belonging to the IB3/6-IB2 serotype had a deletion of the amino acid residues at both 121 and 122 sites (Figure 3).
Correlation between resistance and mutations at 120 and 121 sites in PorB1A and PorB1B
The MICs of penicillin and tetracycline for all the 98 porB1A + gonococcal isolates were 0.06-1 mg/L (<2 mg/L), while the MICs for both antibiotics in the 5 porB1B + gonococcal isolates with no mutations at the 120 and 121 sites in PorB1B were 0.12-0.5 mg/L (<2 mg/L). However, the MICs of penicillin and tetracycline in the 197 porB1B + isolates with replacement mutations at the 120 and/or 121 sites were 2-8 mg/L and 2-16 mg/L, respectively, and the 15 porB1B + isolates with deletion mutations at both the 121 and 122 sites had the highest resistance to penicillin (MICs = 4-8 mg/L) and tetracycline (both MICs = 4-16 mg/L) (Table 3). According to the MIC value (≥2 mg/L) that defines resistance to penicillin and tetracycline, all the porB1A + isolates and the 5 porB1B + isolates without site mutations were no resistance to both antibiotics, while all the remaining 212 porB1B + isolates with different site mutations were penicillin and tetracycline resistant.
The porins of N. gonorrhoea stimulate the host immune system to produce specific antibodies which activate the complement system and promote phagocytosis to eliminate the invading gonococci [9, 42]. Furthermore, gonococcal PorB1A and PorB1B are closely associated with transmission of gonorrhea [38, 42], and mutations at the 120 and 121 sites in PorB1B are related to drug resistance [9, 19, 33, 34]. Thus, determination of the predominance of PorB1A and PorB1B serotypes and drug resistance-associated mutations in the porB1B gene in different areas is important for serological diagnosis and chemotherapy of gonorrhoea.
For rapid and convenient discrimination of porB1A and porB1B genes in N. gonorrhoeae isolates, we designed a duplex PCR system by which both genes were simultaneously detectable. The results indicated that the duplex PCR accurately recognizes the porB1A and porB1B genes in all the 315 tested isolates with high sensitivity and specificity. By using the duplex PCR, we found 31.1% of the 315 isolates tested were positive for the porB1A gene and the porB1B gene was detectable in 68.9% of the isolates. This porB1A + and porB1B + proportion in N. gonorrhoeae isolates is close to that of previous reports [21, 22].
The gonococcal porB1B gene differs from the porB1A gene in having many more mutations in its sequence [19, 38, 39]. Among the 217 porB1B + isolates in this study, 77 (35.5%), 58 (26.7%), and 49 (22.6%) isolates belonged to the IB3/6-IB2, IB3 and IB3/6 serotypes, and only 25 (11.5%) and 8 (3.7%) referred to the IB4 and IB2-IB4-IB2 serotypes, respectively. These data indicate that the predominant serotypes of porB1B + N. gonorrhoeae in Eastern China are IB3/6-IB2, IB3 and IB3/6 (84.8%, 184/217), which quite differs from the IB2, IB4 and IB3 reported as the predominant serotypes in nations in Europe and North America [19, 22–24]. Bash and colleagues (2005) showed that the porB1B gene has a high recombinant mutation frequency compared to the porB1A gene . In our study, two novel recombinant mutations formed IB3/6-IB2 and IB2-IB4-IB2 chimeric serotypes, which also indicates a high frequency of recombination among different gonococcal porB1B genes. There have been reports of N. gonorrhoeae strains that react to both PorB1A and PorB1B antibodies, raising the possibility of mosaicism between porB1A and porB1B alleles [44, 45]. However, no such mosaicism was found in all the N. gonorrhoeae isolates tested in this study.
Olesky et al. (2002) used the site mutation technique to generate mutants at the 120 and 121 sites in PorB1B, and found stronger resistance to penicillin and tetracycline in the G120K, G120D/A121D, G120K/A121R and G120P/A121P mutants . Among the 217 porB1B + isolates in this study, only five had no mutations at the 120 and 121 sites, while the other 212 had various mutations at these sites, in which 76.9% (163/212) had double-site mutations (G120K/A120D, G120K/A121G and G120N/A121D in 135, 19 and 9 isolates). All the 212 porB1B + isolates had a mutation at the G120 site replaced with lysine (K) (76.9%, 163/212), aspartate (D) (11.8%, 25/212) or asparagine (N) (11.3%, 24/212). On the other hand, 76.9% of the 212 porB1B + strains had a mutation at the A121 site replaced with aspartate (D) (88.3%, 144/163) or glycine (G) (11.7%, 19/163). However, the G120R, G120P, A121H and A121P mutations described by Olesky et al were not found, suggesting differences in the amino acids replacement by natural and artificial mutations. Particularly, in this study we found that 15 gonococcal isolates had A121 and N122 deletion mutations in PorB1B that had not previously been reported.
Many previous data revealed that plasmid-mediated resistance of N. gonorrhoeae confer the very high MICs of penicillinand tetracycline [47–49], while chromosomally mediated resistance such as the site mutations at G120 or A121 in gonococcal PorB1B contributes to the moderate higher MICs of the two antibiotics [33, 34]. According to our drug sensitivity tests for the non-PPNG isolates, the G120K/A121D, G120K/A121G, G120N/A121D, G120D and G120K natural porB1B mutants also had stronger resistance to penicillin and tetracycline than porB1B + isolates with no G120 and A121 mutations (Table 3). Interestingly, the 15 porB1B + isolates with A121 and N122 deletions had the highest MICs, which hints at a greater influence of the A121 deletion on resistance than any of the replacement mutations. This resistance relating to chromosomally-mediated site mutations in PorB1B has been shown in many previous reports [33, 46, 50–52]. However, in these reports the PorB1B mutation-associated resistance only noted MICs of penicillin and tetracycline in the range of 2-8 μg/ml. Previous data revealed that site mutations in the penA, mtrR, ponA, and rpsJ genes also participate in chromosomally-mediated gonococcal resistance to penicillin and tetracycline [47, 53–55]. Thus, synergistic action of site mutations in multiple chromosomal genes associated with resistance in N. gonorrhoeae isolates is an important subject for investigation. Such action may be responsible for the high resistance to both antibiotics found in this study.
We found that all the tested porB1A + gonococcal isolates were no resistance to both penicillin and tetracycline, whereas 97.7% (212/217) of the porB1B + isolates had site mutation-based resistance in the PorB1B sequences. The high proportion (100%) of resistance-associated mutations at the 120 and 121 sites in PorB1B of N. gonorrhoeae isolates from other Chinese areas has also been reported [51, 52, 56]. Thus, the duplex PCR established in this study for rapid identification of porB1A + and porB1B + gonococci provides a useful tool for selecting antibiotics to treat gonorrhea in China.
The duplex PCR system we designed simultaneously recognizes porB1A and porB1B genes in N. gonorrhoeae isolates with high sensitivity and specificity. porB1B + N. gonorrhoeae is the predominant genotype in Eastern China. All the porB1A + isolates had the conserved porB1A gene sequence belonging to the IA6 serotype alone. However, the porB1B + isolates had high site mutations in the porB1B sequence that resulted in five PorB1B serotypes. All the porB1A + isolates were no resistance to both penicillin and tetracycline. However, multiple penicillin and tetracycline resistance-related mutations such as G120K/A121D, G120K/A121G and G120N/A121D occurred in PorB1B isolates. A novel mutation due to deletion of both A121 and N122 in PorB1B is correlated with high resistance to penicillin and tetracycline.
sexual transmitted disease
polymerase chain reaction
phosphate buffered saline
ethylenediamine tetraacetic acid
minimal inhibitory concentration
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The pre-publication history for this paper can be accessed here:http://www.biomedcentral.com/1471-2334/10/323/prepub
This work was supported by grants from the Science and Technical Research Project of the Health Bureau of Zhejiang Province, China (2004A018), and the State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, Zhejiang University, China (2008ZZ06). We thank the hospitals in Zhejiang Province and Jiangsu Province, China, for isolating and providing the strains of N. gonorrhoeae from patients. We also thank Dr. IC Bruce, Zhejiang University School of Medicine, for reading the manuscript.
The authors declare that they have no competing interests.
AS participated in the experimental design, obtained funding for the study, performed PCR and drafted the manuscript. XF supervised the collection of gonococcal isolates, and helped to draft the manuscript. PD analyzed the sequencing data. YG helped to draft the manuscript. RT helped to collect the gonococcal isolates. YM helped to perform PCR. XL carried out the drug sensitivity tests. JY participated in the experimental design and obtained funding for the study. All authors have read and approved the final manuscript.